rs13491292 SNP Detail

Summary

• ID
  rs13491292
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192806557 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TAGGC CTGAAGCCCA GCTTAGTTAC
  Y
  GAGTTTACTT CATCACTCAG GTCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss20406678	PS02187225	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T	T					T	T	T			C
ss46774917	NES10640214	PERLEGEN	MM_PANEL2	r	SNP	A			A				A	A	A				A	A			G
ss320200888	CHEV_1_194950443	CHEVERUD	SCREENING_POP	r	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs13491292					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46774917	NES10640214	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192806557 () rs orientation: reverse

Symbol	Name	Function Class
Rr15354	regulatory region 15354	1644 bp proximal
Rr367086	regulatory region 367086	1183 bp downstream
Utp25	UTP25 small subunit processome component	within coordinates