rs13491302 SNP Detail

Summary

• ID
  rs13491302
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:192803172 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTACGTCTCT GAGAGAGAAA
  GCAGTGGGGA GAGAGGAAGG GAGAAGATGG ATCAATTCCA AGACAGACAT ACCCTTGTGA
  CGGATCACGT TGCTGACGTT ATTTGAACAA TTCTAAAGTA ATTTTGACTC TCCTGAGACG
  TGTTCCTTGG AACAGTGAGG GAAACACTAG AGACAGCTCT CAGGTATGAA GTCAGGCTCC
  W
  AGCTGCCCAC TGCTTGTGTA ACTGTTGTCT GGACCCTCTT GCCTGTGTGA GAGAAGGGGA
  TGATCTGTGA GTCATCAGTT ACTCTGAATG TCGTGTGTTG TTACTCATGT CTTACTTAGC
  TCTCTTGATC TGTTTGCCCA TAGTGGCCAG TCCTGGGACA TCTTGTCTTT TCATCAAAGT
  TCCAGAAGAC GGAAACATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20406688	PS02187242	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13491302					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192803172 () rs orientation: reverse

Symbol	Name	Function Class
Rr367086	regulatory region 367086	1918 bp upstream
Utp25	UTP25 small subunit processome component	within coordinates