rs13492594 SNP Detail

Summary

• ID
  rs13492594
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192453482 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CTGGGGAAGG TGGAAGTGAA
  GATGATTTTA AAGTCGGTTT TGCAGAGATT TCTCCAGCTC TATTTAGTCT GCCCTTCACT
  GGTCTAAGTC ATCTTCCTGT AGCAGGGCAG GCCGTACACA CCCCCGCCCC AGACTCATTC
  CTTTGGGGAC CGGAAGAATC CTGGAGCCTG AGGTTCTGGT GGGACCCTGT GTAATGATTC
  S
  GCTCCAGTAA ATGTACAGAG CCCTGGCCAA TCCTGCGTTC GGGAACCCGG GCACAACATC
  TCAGGCCAGG CGCTCACCCC CGCGGCCTCT GACCCGCGCT GTGCTCGCGA GTCCCTCCCG
  GGCCGCGGCT CAGCGCGGCG GGGTGCAGGG ACGCCTTCTC TCCCGCTCGC CCAGCTCTGC
  ACACTGCGAT CCAGGTGATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss20407993	PS02189428	PERLEGEN	MM_PANEL	f	SNP		G	G		G	G	G	G		C	G				G	G	C
ss46771101	NES10640755	PERLEGEN	MM_PANEL2	r	SNP	C			C					C	G		C	G	C		C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs13492594					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46771101	NES10640755	PERLEGEN	MM_PANEL	r	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192453482 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi1234	CpG island 1234	within coordinates
Hhat	hedgehog acyltransferase	mRNA-UTR
Rr426393	regulatory region 426393	within coordinates
Rr426394	regulatory region 426394	576 bp distal
Rr426395	regulatory region 426395	29 bp proximal
Tssr15828	transcription start site region 15828	25 bp downstream