rs13492943 SNP Detail

Summary

• ID
  rs13492943
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192343004 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GACAAATAGC AAGTGGGAAA
  ATCGAGCTTT ACTGGCTCAG TAGTCCATTT GATCAGTTCT CTCCCATTGA GTTTAATCTT
  TTAAAACTGA ATCTATCACT TGTTTTATAG TCATGGAAAT ATGACCTAAT GCATTCCTGA
  GATTCTAGAC AGGAGTTTGT AACCCAGTTT ACTGGTAAGT TTTACCAGCA TTGTATTATG
  S
  AACACACTAA TTTCACATAG CTATGAAGTT AAACAAATTA AACAGAAGTT AATAGACCAG
  AATATTGACA GTGCTTATAA AATGGTTATG ATTTTGAAAA TCAGCTTTGT GAGGCTAAAG
  CAGTGGCTCA GTGGTTTAGG GTACTTGCTG CTCTTGCAGA GGTCCTGGGT TTGATTCCCA
  GTCCCCCCCC CCCTCCCCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
ss20408342	PS02190029	PERLEGEN	MM_PANEL	f	SNP	C	C	C	G		C	C	C		G
ss320199407	CHEV_1_194484578	CHEVERUD	SCREENING_POP	r	SNP					G				C
SNP Consensus Information
SNP					Consensus Type	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
rs13492943					SNP	C	C	C	G	C	C	C	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192343004 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			260 bp distal
Rr426373	regulatory region 426373			868 bp proximal