rs13492950 SNP Detail

Summary

• ID
  rs13492950
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192341982 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        GGAAGATGCC CAAGAACAGC AGCCTCCTGC CTCCCGTGCT
  GGGCGTGGAA CCCAGGGACT TGGAAGAGCA GCCCCTCACC TCCTATGCTG AGGGTGGACA
  S
  CAGGGTCTTG GAACAGCAGC CTCTCACCTC CCAGGCTGGG CGTGGACACC AGGGTCTTGG
  AACAGCAGCC CCTCACCTCC CATGCTGAGT GTGGACACCA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
ss20408349	PS02190036	PERLEGEN	MM_PANEL	f	SNP	G	G	G	C	G	C	G	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	SPRET/EiJ
rs13492950					SNP	G	G	G	C	G	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192341982 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			741 bp proximal
Rr426373	regulatory region 426373			1890 bp proximal