rs13495699 SNP Detail

Summary

• ID
  rs13495699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCAAGTCA CTAAACACAT CCACATGCAC CATTAAACAG
  CATGTCACAT CCCCCAGCTG AGTGACTGAG AAATGTCAAA GTCACCCAAG AATAAAGTGT
  R
  AGGGAATGAG GAATTAGGTT TCCATCGCTC TTCAGAGTAA CCTTACATGC CTTACCTAAC
  CTCTTCAGTG ATCTTGTCCC AGAATACTGT GGAAAAGAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20411151	PS02176867	PERLEGEN	MM_PANEL	f	SNP	A	A	G	A	A	A	A	G	G	A	A	A	G
ss132135317	ENSMUSSNP3629194	ENSEMBL	ENSEMBL_Sanger	f	SNP	A								G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13495699					SNP	A	A	G	A	A	A	A	G	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869643 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	604 bp proximal
Gm30927	predicted gene, 30927	1214 bp upstream
Rr447212	regulatory region 447212	935 bp distal
Rr447213	regulatory region 447213	430 bp proximal
Rr447214	regulatory region 447214	1103 bp proximal
Rr447215	regulatory region 447215	1505 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1208 bp upstream
Tssr101465	transcription start site region 101465	1227 bp upstream
Tssr107965	transcription start site region 107965	1070 bp downstream
Tssr107966	transcription start site region 107966	1132 bp downstream
Tssr107967	transcription start site region 107967	1454 bp downstream
Tssr107968	transcription start site region 107968	1479 bp downstream
Tssr107969	transcription start site region 107969	1537 bp downstream