rs13495700 SNP Detail

Summary

• ID
  rs13495700
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53869812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATGTCAA AGTCACCCAA
  GAATAAAGTG TAAGGGAATG AGGAATTAGG TTTCCATCGC TCTTCAGAGT AACCTTACAT
  GCCTTACCTA ACCTCTTCAG TGATCTTGTC CCAGAATACT GTGGAAAAGA CTCCATACCA
  ACAAGTCACC CTGGATAGAT CTGCAGACAC ATGGGTCCTT AAGAAGTAAC AATCCATCGC
  K
  GGCAAATGGA AAACAGTTTC TCCTGGGGCA TGGCAAGACT TCATTTTGGG GTAAGGATAG
  GTGAGGGAAG AAAGAATAAC TCCAGAAAGG GTAGAGAGTT TGGAACACAC GTTTCTTTAA
  CTTTAAAAAG TTCTGCAAAG AGTCTTTCCT TTCTGAACAG AGGCTAAAAC CTGTGGTCTC
  TTCTCTGGAG CAAGTCTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20411152	PS02176869	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T	T	T		T	T	T	T				T		G	G		T
ss37208452	NES08438005	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	T		T	T	T	G	G		T		G	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13495700					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	G	T	T	G	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37208452	NES08438005	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53869812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2880	CpG island 2880	435 bp proximal
Gm30927	predicted gene, 30927	1045 bp upstream
Rr447212	regulatory region 447212	1104 bp distal
Rr447213	regulatory region 447213	261 bp proximal
Rr447214	regulatory region 447214	934 bp proximal
Rr447215	regulatory region 447215	1336 bp proximal
Slc22a21	solute carrier family 22 (organic cation transporter), member 21	within coordinates
Tssr101464	transcription start site region 101464	1039 bp upstream
Tssr101465	transcription start site region 101465	1058 bp upstream
Tssr107965	transcription start site region 107965	901 bp downstream
Tssr107966	transcription start site region 107966	963 bp downstream
Tssr107967	transcription start site region 107967	1285 bp downstream
Tssr107968	transcription start site region 107968	1310 bp downstream
Tssr107969	transcription start site region 107969	1368 bp downstream