rs13496921 SNP Detail

Summary

• ID
  rs13496921
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134681986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCAGTCAT TCTGCAGATG
  GTTACCTTGC CAGAAGGATT GGTAACATGA ACAAAGGTAT CACTGAAGGA TGCAAGAAGG
  TGGCAGATGC CGAATACATT CTCTCCTTCA GCTACTTGAG GGCTGAGGCC CATTAATGAC
  TTTGTCTATA CCTTCCCTGT GCAAGGTGAC ATTCTGTGCA TTGCTTTCAG ACTCCTACAC
  Y
  AGATATCCAG ATATTCCATT CTTTTTTTTT TTTTTTTTTT TTTCCCAGAC AGGGTTTCTC
  TGTGTAGCCC CGGCTGTCCT GGAACTCACT CTGCAGACCA GGCTGTCCTG AAACTCACTC
  TGCAGACCAG GCTGGCCTGG AACTCAGAGA TCTGCCTGTT TCCGCCTCCC AAGTGCTGGG
  ATTAAAGGTG TGCAACACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss20412405	PS02179424	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T		T			T	C					T		T	T
ss60845243	NES16004340	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	T		C	T	T	T	C		T		T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13496921					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60845243	NES16004340	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134681986 () rs orientation: forward

Symbol	Name	Function Class
Rr622113	regulatory region 622113	1901 bp distal
Rr622114	regulatory region 622114	1990 bp distal
Rr622115	regulatory region 622115	1803 bp distal
Rr622116	regulatory region 622116	610 bp distal
Rr622117	regulatory region 622117	1262 bp proximal
Rr622118	regulatory region 622118	1727 bp proximal