rs13496924 SNP Detail

Summary

• ID
  rs13496924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134688375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGA GAAAAGGGCC CGCTAGGTGA
  Y
  GATTTTGGAG TTCAGCCCTA GGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
ss20412408	PS02179431	PERLEGEN	MM_PANEL	f	SNP	C	T	T	T	C	C	C	C	C	C		T	C	C		C
ss45848876	mCV27572494	ABI	CRAMUS_MOUSE	f	SNP			T					C		C
ss144508965	ENSMUSSNP1727998	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							C
ss321696379	CHEV_5_135135391	CHEVERUD	SCREENING_POP	f	SNP											T				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J	SPRET/EiJ
rs13496924					SNP	C	T	T	T	C	C	C	C	C	C	T	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134688375 () rs orientation: forward

Symbol	Name	Function Class
Limk1	LIM domain kinase 1	within coordinates
Tssr53665	transcription start site region 53665	1939 bp upstream