rs13497265 SNP Detail

Summary

• ID
  rs13497265
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGATTTG ATCCCCAAGG
  ACCACAGGGA GTAAAAAAAT GAACTATAAA GAGAAAATAG AACAGCTTGG GTCTGTTATG
  ACAGTCTCAG GTAGCCCAGC CTGGCCTCAA ACTGACTATG TAATGAAAGA TGGTCTTGAA
  CTCGTGATCC TCCCATCTCT ACCTCCTGAG TGCTGGGATC CTATCACAAG CCCACTCTCC
  R
  GACTTGAAAA CAATCTGATA CCTTCATGAG AACTTGGCTA TCCCCACAAA ATCAAGAAGT
  GGTAAGTGGG GTGACGAGAG GGCTGAGCCG GTAAAAAGTG AGCTGCGTAA AAGTGCAGTG
  GTGTGAGTCC CCCCCCCCAA CCCCACATAA AGGTGGGAGG GGAGAGTCAC CTCCACAAAG
  TTGTCTTCTG GTCTCAGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412750	PS02180291	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497265					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972517 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1460 bp downstream
Mettl27	methyltransferase like 27	1026 bp downstream
Rr124500	regulatory region 124500	683 bp proximal
Rr367963	regulatory region 367963	1476 bp downstream
Tssr49107	transcription start site region 49107	1463 bp upstream
Tssr49108	transcription start site region 49108	1605 bp upstream
Tssr53699	transcription start site region 53699	1588 bp downstream