rs13497266 SNP Detail

Summary

• ID
  rs13497266
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGTAAAAAG TGAGCTGCGT
  AAAAGTGCAG TGGTGTGAGT CCCCCCCCCC AACCCCACAT AAAGGTGGGA GGGGAGAGTC
  ACCTCCACAA AGTTGTCTTC TGGTCTCAGT TCTGGAGCTG AGCCACAGTT GCGCATGAAC
  AGGGAAGGGT TCTGTGTGGA TGGAGCTCAG AGCTAGAAAG CTGGTGTACT TGAGTCCCAT
  Y
  CCAGCTCTGA ATAAATCTGT GGTGTCCCTG CCCATAATCA GAGCACCTGA GAGGGGGAGA
  AAGGAGAAGG AGAAAACTCA AAACCATCCT TTGTGATGGA TCAGGTTTGA GTTCAGCCAG
  GATACAAGAC CCTGTTTCAA CAGAGTAGGG ATCCTGTCCT AGTAGCAACA AACCCTTCCT
  CCTCAGCAAC ACATAAAACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412751	PS02180294	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497266					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972806 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1171 bp downstream
Mettl27	methyltransferase like 27	1315 bp downstream
Rr124500	regulatory region 124500	394 bp proximal
Rr367963	regulatory region 367963	1765 bp downstream
Tssr49107	transcription start site region 49107	1174 bp upstream
Tssr49108	transcription start site region 49108	1316 bp upstream
Tssr53699	transcription start site region 53699	1299 bp downstream
Tssr53700	transcription start site region 53700	1864 bp downstream