rs13497267 SNP Detail

Summary

• ID
  rs13497267
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  121
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134972963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGAAAGGAG AAGGAGAAAA CTCAAAACCA TCCTTTGTGA
  TGGATCAGGT TTGAGTTCAG CCAGGATACA AGACCCTGTT TCAACAGAGT AGGGATCCTG
  Y
  CCTAGTAGCA ACAAACCCTT CCtcctcagc aacacataaa acaggcatgg tggttcacat
  ctctaatccc aacactgggg aaatggaagc aggatgatcA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412752	PS02180296	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497267					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134972963 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	1014 bp downstream
Cpgi16731	CpG island 16731	1976 bp proximal
Mettl27	methyltransferase like 27	1472 bp downstream
Rr124500	regulatory region 124500	237 bp proximal
Rr367963	regulatory region 367963	1922 bp downstream
Tssr49107	transcription start site region 49107	1017 bp upstream
Tssr49108	transcription start site region 49108	1159 bp upstream
Tssr53699	transcription start site region 53699	1142 bp downstream
Tssr53700	transcription start site region 53700	1707 bp downstream
Tssr53701	transcription start site region 53701	1912 bp downstream