rs13497268 SNP Detail

Summary

• ID
  rs13497268
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134973434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATTCCAG GGCTGTGGGA
  GGACTCCCTA GGGAAGAGGC CACAGCCCGG ACCTGTAAGA CCAGCAAGGC TTCAAGAGTG
  GGAAAAGGAC ATTCCTTAGA GAAGGTGACT GCTATAACGT GGCCTGTGGA AGATAAGCAG
  GCCAGCCTGT TTGCTCAGAG AAAGGAAGGC CAGAAAGGAA GAGGCAGGGG AATTAGCCCT
  K
  GTTGTTCCTG TCATCTGTTG TCCCTCCCAG AGTCCCCCAG CCCCACCCCA CCCCACCCCC
  ACCCCCAGTC CTGGGCATAC ACTGGGCCCT AGATACAGGG TTTCCCCTCT AACAAATGAA
  GAGATTGTCA TCATGGTAAT CTCATCAAAA CTGAGGCAGG AGAATTGCAT TGAGTTTGAT
  GTTAGTCTGG GCTTTATACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ
ss20412753	PS02180298	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	G	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ
rs13497268					SNP	T	T	T	T	T	T	G	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134973434 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	543 bp downstream
Cpgi16731	CpG island 16731	1505 bp proximal
Mettl27	methyltransferase like 27	1943 bp downstream
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	546 bp upstream
Tssr49108	transcription start site region 49108	688 bp upstream
Tssr49109	transcription start site region 49109	1539 bp upstream
Tssr53699	transcription start site region 53699	671 bp downstream
Tssr53700	transcription start site region 53700	1236 bp downstream
Tssr53701	transcription start site region 53701	1441 bp downstream
Tssr53702	transcription start site region 53702	1675 bp downstream
Tssr53703	transcription start site region 53703	1859 bp downstream