rs13497269 SNP Detail

Summary

• ID
  rs13497269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134974589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGTGGGT GGGTCAAGCA
  CAGTCATTGC TAATCAACGG AAGGGTTCCA TGGCAGAGCC CACCGGCTCT CAATGGCCCC
  TCAGTCAGTC ACTCAGCACA CCATGACTTG GGGTAGGACC AGCTGTGCTC GGAAACACGG
  GGCGTAATGG CAAGAGTAGC GCTGGAGTAA CGTGTAGGCT GAGTGAGGGG GATAGAGAAA
  R
  GACAGTGGAC GTTTGCTAAC ATGAGGACAT CCACTCCAGA GTCCAAAGTC ACAGCTGAGC
  TACCCCGGCC AGCAGGACCC AGCTTGCGCC TCTACTGCCC TTCCCAGCTG CTTCTGCCTT
  CAGCCCCATA TCCACCAGCA ATTTGGATGT AAGCAGCAAG ATATTTTTAC ATCCATTCTT
  GCCGGCCGTA AGGAGCCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412754	PS02180301	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497269					SNP	G	G	G	G	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134974589 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	350 bp proximal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	605 bp downstream
Tssr49108	transcription start site region 49108	428 bp downstream
Tssr49109	transcription start site region 49109	384 bp upstream
Tssr53699	transcription start site region 53699	477 bp upstream
Tssr53700	transcription start site region 53700	81 bp downstream
Tssr53701	transcription start site region 53701	286 bp downstream
Tssr53702	transcription start site region 53702	520 bp downstream
Tssr53703	transcription start site region 53703	704 bp downstream
Tssr53704	transcription start site region 53704	1161 bp downstream
Tssr53705	transcription start site region 53705	1182 bp downstream