rs13497270 SNP Detail

Summary

• ID
  rs13497270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:134974766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGTGAG GGGGATAGAG
  AAAGGACAGT GGACGTTTGC TAACATGAGG ACATCCACTC CAGAGTCCAA AGTCACAGCT
  GAGCTACCCC GGCCAGCAGG ACCCAGCTTG CGCCTCTACT GCCCTTCCCA GCTGCTTCTG
  CCTTCAGCCC CATATCCACC AGCAATTTGG ATGTAAGCAG CAAGATATTT TTACATCCAT
  Y
  CTTGCCGGCC GTAAGGAGCC ATGTGGAGCA GCCCAAGAGC TACGGGCTAG TAACTTTGCA
  CAGTCCGGGT TTGCCTGTCC CCAGCAAGCA GTTAGTGGCC CATAGCAGGG CAGGTCCTGG
  AGAATGTGAG GGGCCACAGG CTGTTATGAG CTCAATCCGA AAAAAAGATA ACAAAGGCAA
  TGTGGACAGA GTGGCCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412755	PS02180303	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497270					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:134974766 () rs orientation: forward

Symbol	Name	Function Class
Cldn4	claudin 4	within coordinates
Cpgi16731	CpG island 16731	173 bp proximal
Rr124500	regulatory region 124500	within coordinates
Tssr49107	transcription start site region 49107	782 bp downstream
Tssr49108	transcription start site region 49108	605 bp downstream
Tssr49109	transcription start site region 49109	207 bp upstream
Tssr53699	transcription start site region 53699	654 bp upstream
Tssr53700	transcription start site region 53700	76 bp upstream
Tssr53701	transcription start site region 53701	109 bp downstream
Tssr53702	transcription start site region 53702	343 bp downstream
Tssr53703	transcription start site region 53703	527 bp downstream
Tssr53704	transcription start site region 53704	984 bp downstream
Tssr53705	transcription start site region 53705	1005 bp downstream