rs13497341 SNP Detail

Summary

• ID
  rs13497341
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135039993 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTATGA GGCCATGAGT
  CAGGACCTTC AGGGCCTCCT TCCACAGCTG GGTCTGGTGC CCTGCGTCCT CGTTGGCCAC
  AGCATGGGAG GAAAGACAGC CATGCTCCTG GCACTGCAGA GGGTAAGCTA CACCTATCTG
  GGTCCTCTTA ATGCACTCTA AGCCCATTGA TAACGTGGGA CTCATCCACA CTTTGGATGG
  Y
  CAGGTCCAGA AACTCTGCTG GCGGCTCAGA GTTTGTCTGG GACCTGCTCT GGTCTGATTC
  TGTCTCCCAG CCAGATGTTG TGGAACGATT GGTTGTTGTA GACATAAGCC CGGTAGGAAC
  CACACCTGGA TCACACATTG GAGCCTTCAT AGCAGCCATG AAGGCTGTTG AGATCCCAGA
  GAAGGTGCCG CACTCCCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412826	PS02180503	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497341					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135039993 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	1047 bp downstream
Cpgi16736	CpG island 16736	965 bp distal
Gm43372	predicted gene 43372	1031 bp upstream
Gm73578	predicted gene, 73578	848 bp downstream
Rr110217	regulatory region 110217	1608 bp proximal
Rr124503	regulatory region 124503	within coordinates
Rr124504	regulatory region 124504	607 bp proximal
Tssr1661	transcription start site region 1661	1107 bp downstream
Tssr1662	transcription start site region 1662	1588 bp downstream
Tssr49120	transcription start site region 49120	1822 bp downstream
Tssr49121	transcription start site region 49121	1686 bp downstream
Tssr49122	transcription start site region 49122	1440 bp downstream
Tssr49123	transcription start site region 49123	1413 bp downstream
Tssr49124	transcription start site region 49124	1374 bp downstream
Tssr49125	transcription start site region 49125	1363 bp downstream
Tssr49126	transcription start site region 49126	1294 bp downstream
Tssr49127	transcription start site region 49127	1238 bp downstream
Tssr49128	transcription start site region 49128	1125 bp downstream
Tssr53717	transcription start site region 53717	1607 bp downstream
Tssr53718	transcription start site region 53718	1623 bp downstream
Tssr53719	transcription start site region 53719	1673 bp downstream
Tssr53720	transcription start site region 53720	1718 bp downstream
Tssr53721	transcription start site region 53721	1975 bp downstream
Tssr53722	transcription start site region 53722	1992 bp downstream