rs13497342 SNP Detail

Summary

• ID
  rs13497342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTTCGGT TGTCAAGGTG
  ACGCACGCCC CCCCCCCCTT TCCCCATGGT GTGTGTCAGA GGAAAAGTGG TGGGTGGGCC
  TCACAGGGAG CCCCTTCACA GCTGCCAGGT CTCCCCACAG GAAGCGGGCA TTCGGCAGTT
  CCTGCTCACT AACCTGGTAG AGGTGGGTGG GCGATTCTCC TGGAGACTGA ACTTGGATAC
  R
  TTAGCTCAGC ACTTGGACAA GATAATGACC TTTCCTCAGC AACGTGAACC CTACTCGGGG
  CCAACTCTCT TCCTGCTTGG TGGAAATTCT ACATATGTAC AGTAAGCCGG TGTGGGACCA
  TAGGAAGGGG CATGCTTTGC CCACCACCAG CTATGGGAGC CTGCGTGGGC TAGGGGAGGC
  GGGGTATCTG GGAGCCTGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412827	PS02180505	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497342					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040418 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	622 bp downstream
Cpgi16736	CpG island 16736	1390 bp distal
Gm43372	predicted gene 43372	1456 bp upstream
Gm73578	predicted gene, 73578	423 bp downstream
Rr110217	regulatory region 110217	1183 bp proximal
Rr110218	regulatory region 110218	1583 bp proximal
Rr124503	regulatory region 124503	417 bp distal
Rr124504	regulatory region 124504	182 bp proximal
Tssr1661	transcription start site region 1661	1532 bp downstream
Tssr1662	transcription start site region 1662	1163 bp downstream
Tssr1663	transcription start site region 1663	1595 bp downstream
Tssr1664	transcription start site region 1664	1613 bp downstream
Tssr49122	transcription start site region 49122	1865 bp downstream
Tssr49123	transcription start site region 49123	1838 bp downstream
Tssr49124	transcription start site region 49124	1799 bp downstream
Tssr49125	transcription start site region 49125	1788 bp downstream
Tssr49126	transcription start site region 49126	1719 bp downstream
Tssr49127	transcription start site region 49127	1663 bp downstream
Tssr49128	transcription start site region 49128	1550 bp downstream
Tssr53717	transcription start site region 53717	1182 bp downstream
Tssr53718	transcription start site region 53718	1198 bp downstream
Tssr53719	transcription start site region 53719	1248 bp downstream
Tssr53720	transcription start site region 53720	1293 bp downstream
Tssr53721	transcription start site region 53721	1550 bp downstream
Tssr53722	transcription start site region 53722	1567 bp downstream