rs13497343 SNP Detail

Summary

• ID
  rs13497343
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTACAGT AAGCCGGTGT
  GGGACCATAG GAAGGGGCAT GCTTTGCCCA CCACCAGCTA TGGGAGCCTG CGTGGGCTAG
  GGGAGGCGGG GTATCTGGGA GCCTGGCAAT ACCACTGCGC ATGAAGGCTC ATGCACATCT
  CTCTCTCCTG TTCTCTCTCT CTCCCTTTCT CCCTCTCCCC ACACCTCTCC ATTGTCTTCC
  M
  TCTCCATTGG CTTCACTATG GCGGCCAGAC CCAGCCACCA CTCAGAGATT AGGCGACTCT
  TCCCTCAAGC CCAGATTCAG ACCGTGCCTA ACGCTGGCCA CTGGGTCCAC AGCGACAAAC
  CCCAAGACTT CATGGATGCT GTCACCAGCT TCTTGGCTTA AGAAGTAGCT CCTTGGAAGA
  GCAGCCAGGG GACTCTAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412828	PS02180508	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	A	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497343					SNP	C	C	C	C	C	C	A	C	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040712 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	328 bp downstream
Cpgi16736	CpG island 16736	1684 bp distal
Gm43372	predicted gene 43372	1750 bp upstream
Gm73578	predicted gene, 73578	129 bp downstream
Rr110217	regulatory region 110217	889 bp proximal
Rr110218	regulatory region 110218	1289 bp proximal
Rr124503	regulatory region 124503	711 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1661	transcription start site region 1661	1826 bp downstream
Tssr1662	transcription start site region 1662	869 bp downstream
Tssr1663	transcription start site region 1663	1301 bp downstream
Tssr1664	transcription start site region 1664	1319 bp downstream
Tssr49127	transcription start site region 49127	1957 bp downstream
Tssr49128	transcription start site region 49128	1844 bp downstream
Tssr53717	transcription start site region 53717	888 bp downstream
Tssr53718	transcription start site region 53718	904 bp downstream
Tssr53719	transcription start site region 53719	954 bp downstream
Tssr53720	transcription start site region 53720	999 bp downstream
Tssr53721	transcription start site region 53721	1256 bp downstream
Tssr53722	transcription start site region 53722	1273 bp downstream