rs13497344 SNP Detail

Summary

• ID
  rs13497344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135040893 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCTCCA TTGTCTTCCC
  TCTCCATTGG CTTCACTATG GCGGCCAGAC CCAGCCACCA CTCAGAGATT AGGCGACTCT
  TCCCTCAAGC CCAGATTCAG ACCGTGCCTA ACGCTGGCCA CTGGGTCCAC AGCGACAAAC
  CCCAAGACTT CATGGATGCT GTCACCAGCT TCTTGGCTTA AGAAGTAGCT CCTTGGAAGA
  R
  CAGCCAGGGG ACTCTAGGCT TGGGATCTGT GCCATCTTGC TTCTGCACAG AAAAACTCAG
  GGGCACGGAG AGGGTCCAGG AGTACAGAAG TGGCCCAACA CTTTTAATGA ATAAAGACAG
  TTCCCCTTTA AGCCCTGGAT CCGTTTTCAC CACCGTCGCC CCCACTGACC CCGGGAGAGT
  TGAATCCAGG AACTTCTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412829	PS02180510	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497344					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135040893 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	within coordinates
Abhd11os	abhydrolase domain containing 11, opposite strand	147 bp downstream
Cpgi16736	CpG island 16736	1865 bp distal
Gm43372	predicted gene 43372	1931 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	708 bp proximal
Rr110218	regulatory region 110218	1108 bp proximal
Rr124503	regulatory region 124503	892 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	688 bp downstream
Tssr1663	transcription start site region 1663	1120 bp downstream
Tssr1664	transcription start site region 1664	1138 bp downstream
Tssr53717	transcription start site region 53717	707 bp downstream
Tssr53718	transcription start site region 53718	723 bp downstream
Tssr53719	transcription start site region 53719	773 bp downstream
Tssr53720	transcription start site region 53720	818 bp downstream
Tssr53721	transcription start site region 53721	1075 bp downstream
Tssr53722	transcription start site region 53722	1092 bp downstream