rs13497345 SNP Detail

Summary

• ID
  rs13497345
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041740 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTCACTT AGCAATGGCT
  TCATCCCTCT CCTGCAGTAC TTGCTCCAGG GAAGGTTCCG CCCGGGTGTC CCCCAGTGCT
  CCTGCCGCTT GGGATTCTGG GTTCTGTTGG GGAGTGATGG ATGAGGAGGC AGTGACCTGG
  GGCTTGTCAG AAGGAGAAGC CTCACCCTGG GTCCTTCTGC CCTGCCTCTG CCCTGCCTCA
  Y
  GCTATTTCCA CTCAGTTTTA CCACCCTTTG CCTCCAGGGG GTGCTGCGCC GGCATCTTGT
  AAAGGAGACC CTTAGTCTGG CTAGCCGGGA AGTAGACTAT GGGACTTTGC AGAATGGACA
  GTGTTTGAAG CTCCTGAGGA GAAAGGAGTT CCCACACAGC CCTACAGAAA TGCTACTGAG
  TGCTCTGGAG TCGCTTACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412830	PS02180512	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497345					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041740 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	711 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	98 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	within coordinates
Rr110218	regulatory region 110218	261 bp proximal
Rr124503	regulatory region 124503	1739 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	149 bp upstream
Tssr1663	transcription start site region 1663	273 bp downstream
Tssr1664	transcription start site region 1664	291 bp downstream
Tssr53717	transcription start site region 53717	125 bp upstream
Tssr53718	transcription start site region 53718	78 bp upstream
Tssr53719	transcription start site region 53719	63 bp upstream
Tssr53720	transcription start site region 53720	18 bp upstream
Tssr53721	transcription start site region 53721	228 bp downstream
Tssr53722	transcription start site region 53722	245 bp downstream