rs13497346 SNP Detail

Summary

• ID
  rs13497346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135041906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTCCTT CTGCCCTGCC
  TCTGCCCTGC CTCATGCTAT TTCCACTCAG TTTTACCACC CTTTGCCTCC AGGGGGTGCT
  GCGCCGGCAT CTTGTAAAGG AGACCCTTAG TCTGGCTAGC CGGGAAGTAG ACTATGGGAC
  TTTGCAGAAT GGACAGTGTT TGAAGCTCCT GAGGAGAAAG GAGTTCCCAC ACAGCCCTAC
  R
  GAAATGCTAC TGAGTGCTCT GGAGTCGCTT ACCTTTCTAT GAGCTTAGAG AGTCAAGGCC
  TGGTGACTGA GACTTGTCAG TTGGTAGAGG CTAGAAGACA GAGCCCTTTG CCCTTCCAGG
  CAAGGCACTC CCTAGCAGAC TCCACCTACA GGAGGACAGC CTGGGGCAAG GAGCAAGTGC
  ACCTCCCTCT TAACACCTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20412831	PS02180515	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13497346					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135041906 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	877 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	264 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	106 bp distal
Rr110218	regulatory region 110218	95 bp proximal
Rr110219	regulatory region 110219	1895 bp proximal
Rr124503	regulatory region 124503	1905 bp distal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	315 bp upstream
Tssr1663	transcription start site region 1663	107 bp downstream
Tssr1664	transcription start site region 1664	125 bp downstream
Tssr53717	transcription start site region 53717	291 bp upstream
Tssr53718	transcription start site region 53718	244 bp upstream
Tssr53719	transcription start site region 53719	229 bp upstream
Tssr53720	transcription start site region 53720	184 bp upstream
Tssr53721	transcription start site region 53721	62 bp downstream
Tssr53722	transcription start site region 53722	79 bp downstream