rs13497347 SNP Detail

Summary

• ID
  rs13497347
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135042143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGAGCTT AGAGAGTCAA
  GGCCTGGTGA CTGAGACTTG TCAGTTGGTA GAGGCTAGAA GACAGAGCCC TTTGCCCTTC
  CAGGCAAGGC ACTCCCTAGC AGACTCCACC TACAGGAGGA CAGCCTGGGG CAAGGAGCAA
  GTGCACCTCC CTCTTAACAC CTTGGAAGGC CCCAAGCCTT TTCCCCAATT CTTGCCGTCT
  K
  TCGCCTCCAG GGGGCGCTCC ACCCGTGTCT CAGAGGAACA GACAACCTAG GTTTAGTTTA
  GTTGTAATGC CAAGCATCAG GCAGTGTCTC GTCTAGTCTC CGCCCCCCCT CGCCCCCCCC
  CCCCGCCCTG CCACGAGGGG TTGACTCTGT GCTAGTTCTT CAAGGAATCA TCTGCCCCCA
  GAATTCTTTT TTTTTTTTAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20412832	PS02180517	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13497347					SNP	G	G	G	G	G	G	T	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135042143 () rs orientation: forward

Symbol	Name	Function Class
Abhd11	abhydrolase domain containing 11	1114 bp downstream
Abhd11os	abhydrolase domain containing 11, opposite strand	501 bp upstream
Gm73578	predicted gene, 73578	within coordinates
Rr110217	regulatory region 110217	343 bp distal
Rr110218	regulatory region 110218	within coordinates
Rr110219	regulatory region 110219	1658 bp proximal
Rr124504	regulatory region 124504	within coordinates
Tssr1662	transcription start site region 1662	552 bp upstream
Tssr1663	transcription start site region 1663	119 bp upstream
Tssr1664	transcription start site region 1664	85 bp upstream
Tssr53717	transcription start site region 53717	528 bp upstream
Tssr53718	transcription start site region 53718	481 bp upstream
Tssr53719	transcription start site region 53719	466 bp upstream
Tssr53720	transcription start site region 53720	421 bp upstream
Tssr53721	transcription start site region 53721	164 bp upstream
Tssr53722	transcription start site region 53722	131 bp upstream