rs13498133 SNP Detail

Summary

• ID
  rs13498133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135658538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTTCT CCTTTCCTCA
  TGCCCCACCC TCTGTATCTA TCTGTCTCTT TTTGTATGTA TATCTCTGTC TCTCTCTCTT
  TCTCTTTCTC TCTCCTAGTG AAGCTATTCT CTCCCTCTAA GGCTCCCCCT CCCACCTCTA
  AGACTCAATC ACCCCTCTGC ATCCTTCTCA TGCTAATTGC CCCTATTGAA AGGAATTGTG
  Y
  CTGTGTCCCT TCCACAGCTT TTCTTCAATT CCACTTCACC CCTTCCCTGT GGGCTATGAC
  CTCACTCCGT GAGAGGAAAC AAACCCCTTC CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT
  TCCTTCCTTC CTCCCTCCCT CCCTTCCTTC CTTCCTTAAG GTGTTACTGT CATAGCATCA
  AGAAAAGTAA GGAACAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	MRL/MpJ	SPRET/EiJ
ss20413630	PS02182545	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	MRL/MpJ	SPRET/EiJ
rs13498133					SNP	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135658538 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	736 bp downstream
Rr622386	regulatory region 622386	904 bp distal
Rr622387	regulatory region 622387	298 bp distal
Rr622388	regulatory region 622388	878 bp proximal
Rr622389	regulatory region 622389	1114 bp proximal