rs13498282 SNP Detail

Summary

• ID
  rs13498282
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135755807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGAGCCA GCTGGCCTGG
  AGTTTGGCCC TTTCCACCCA CAGCAGGACA CTAGCCTCAG GGCTGGGCCC TTGGGAGCCT
  GCTGTTGTAG CTCTTGAGAA TGGAGCCCAG CCTTTTGTGT CTCTCTGGCT CTAGCACCTC
  TGTGGCTTTG TGCCACCTTA GGCTGCTGGG CAATTTCAGA TGAAATCACA GACTGGCCCA
  R
  ATAGCTACTC ACTTTCCAAG AAGACCTTTG TCCCCTTGAG TGTCACTCAA GTTCCAGGTG
  CCTGGCAGGA CTCAGGAGAT ACTGCAGAGT CTAGTTAAAG TAGCTAAGGC CTTCAGGGAC
  TAGGGCTGGG ATGCCTGTCA CATGCCTATG TGGTGACAGG GCCTAGGTTT GCAGCCAGTT
  CTGCCTCTGA CGTGGCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413781	PS02182919	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	C3H/HeJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498282					SNP	G	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135755807 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	within coordinates
Rr124528	regulatory region 124528	within coordinates
Tssr49176	transcription start site region 49176	1213 bp downstream
Tssr49177	transcription start site region 49177	1179 bp downstream
Tssr49178	transcription start site region 49178	1703 bp upstream