rs13498283 SNP Detail

Summary

• ID
  rs13498283
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135756927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCCTG TGCCTCTCAA
  GTGCCAGGAT TAAAGGTGTG CGCCACCACC GCAGGCGGCC GCCCACTTTT CCCCTGAGTT
  TGTCTTTGTG TCTGTGTGAG GGTGGCCGCT CATACTCATG CACATGATGT CCAGGTATGC
  AGAGGTCAGA AGTCACCTCA AGTGCTGGAA ACCTTACCAG ACTCTGTGTA TATATTCTGT
  R
  TAAGTATATG CAGCTGTGCG CACATACAGG CTAGAGGTAG CACAGGATGG CCAGCTTGTC
  GTGGTGTGGG ATGCAAACTC TCATCCTCAT GACTGGGGAT CAAGCCCTCT TCGTTGCTGG
  GCTATCTCTG CACATGCACA GCCCTCCCCC CCCCCCCATA CACCCCGGCC CACATCTCAC
  ACTCCTATCC CCTGAGCACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/LacJ
ss20413782	PS02182921	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G		G	G
ss144510650	ENSMUSSNP6440110	ENSEMBL	ENSEMBL_Sanger	f	SNP											G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	MSM/Ms	NZB/BlNJ	NZW/LacJ
rs13498283					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135756927 () rs orientation: forward

Symbol	Name	Function Class
Por	cytochrome p450 oxidoreductase	Intron
Rr622420	regulatory region 622420	1704 bp distal
Rr622421	regulatory region 622421	541 bp distal
Tssr49178	transcription start site region 49178	583 bp upstream