rs13498336 SNP Detail

Summary

• ID
  rs13498336
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135805646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTATCCA TATATCCCCA
  CCCCAATAGA AAGCATCTCC TGGAACACAA GGCTACGTCT TCCTGTCTCC TCCTTTCCCT
  TGCCTCTCCA TACTTGGCAC TATTGAAGAA TCAGCAGCAT GGGCCCTGGA GATTGCACTC
  AGGCTTGGCA GCCCGCTTCT CTGCCCACTG AACCATTACC AGCTCAGACA AGAGGCACTT
  Y
  CCTCCTCCAG GGCTCCCACT AAGACCCACC CAGTCTTCTG GCAGGTCTGT TTAAGTGGCT
  CATCCTCTGG AAGGTTCTTT TAACATGACC TCCGTTCCAA GCCCATTTCC CCAGGTTCGC
  ATATCACTTC TCCAAATGTT GCTCAGATGC CCACTAGATT CTGCTCCCCA AAGGCCAGGC
  AAGAACCGGG GGAGGCATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413842	PS02183084	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498336					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135805646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1021 bp proximal
Gm30205	predicted gene, 30205	1956 bp downstream
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	1857 bp upstream
Rr367967	regulatory region 367967	1448 bp upstream
Rr622430	regulatory region 622430	982 bp proximal
Rr622431	regulatory region 622431	1436 bp proximal
Rr622432	regulatory region 622432	1699 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	within coordinates
Tssr49186	transcription start site region 49186	156 bp downstream
Tssr49187	transcription start site region 49187	1673 bp upstream
Tssr49188	transcription start site region 49188	1836 bp upstream
Tssr49189	transcription start site region 49189	1855 bp upstream
Tssr49190	transcription start site region 49190	1882 bp upstream
Tssr49191	transcription start site region 49191	1908 bp upstream
Tssr53761	transcription start site region 53761	1490 bp downstream
Tssr53762	transcription start site region 53762	1548 bp downstream