rs13498337 SNP Detail

Summary

• ID
  rs13498337
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135806619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TTTTTAATCG TGTGTTGTGC
  R
  GATTTTAGTA AGAAAGGAAG GAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
ss20413843	PS02183086	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	A	A	G	A	G		A	G	G
ss321697708	CHEV_5_136253635	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	LG/J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SM/J
rs13498337					SNP	G	G	G	G	A	A	G	A	G	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135806619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	48 bp proximal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	884 bp upstream
Rr367967	regulatory region 367967	475 bp upstream
Rr622430	regulatory region 622430	9 bp proximal
Rr622431	regulatory region 622431	463 bp proximal
Rr622432	regulatory region 622432	726 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	Intron
Tssr49186	transcription start site region 49186	1129 bp downstream
Tssr49187	transcription start site region 49187	700 bp upstream
Tssr49188	transcription start site region 49188	863 bp upstream
Tssr49189	transcription start site region 49189	882 bp upstream
Tssr49190	transcription start site region 49190	909 bp upstream
Tssr49191	transcription start site region 49191	935 bp upstream
Tssr53761	transcription start site region 53761	517 bp downstream
Tssr53762	transcription start site region 53762	575 bp downstream