rs13498338 SNP Detail

Summary

• ID
  rs13498338
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGGGTTGC TAGGGGCGGT
  CCCAAGATTC CGCCTAATCC TGGTGACCGT CTGTCCTAGC GCTAGGTCCC GGAAGTGGGC
  AAAGCTAACG GTGGGGAGGG GCGGGGCAAG GGGCGGGGTA GGAGGCGGGG GAAGGAACGG
  CCTGATAAAG TGAAGCCGGG CCTCTCTCGC GAGATCTCGG AAGTGGCCGG AGCCCAGAGA
  Y
  GACTTCTTTG GAGCCGGAGA GAATCGTGAC GTCAGGCCTC GCTCGCCGGG TCTAGGGCGT
  GCTAGACAAG GAACCACACG GCCGAGCCTG TCTCGCGAGA TTTGGCTCAA GCTTCTTGCG
  CTTCTCTCGC GAGATCAGGT GGCTCTGGAC CGGGCGGCCA CTGCGCAGAG TGGAGGTCGT
  TGGAGTCACT CGTCTTCTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20413844	PS02183089	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13498338					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	154 bp upstream
Rr367967	regulatory region 367967	within coordinates
Rr622430	regulatory region 622430	268 bp distal
Rr622431	regulatory region 622431	5 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1909 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	110 bp upstream
Tssr49186	transcription start site region 49186	1859 bp downstream
Tssr49187	transcription start site region 49187	24 bp downstream
Tssr49188	transcription start site region 49188	133 bp upstream
Tssr49189	transcription start site region 49189	152 bp upstream
Tssr49190	transcription start site region 49190	179 bp upstream
Tssr49191	transcription start site region 49191	205 bp upstream
Tssr53761	transcription start site region 53761	167 bp upstream
Tssr53762	transcription start site region 53762	104 bp upstream