rs13498340 SNP Detail

Summary

• ID
  rs13498340
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGCGGGG GAAGGAACGG
  CCTGATAAAG TGAAGCCGGG CCTCTCTCGC GAGATCTCGG AAGTGGCCGG AGCCCAGAGA
  TGACTTCTTT GGAGCCGGAG AGAATCGTGA CGTCAGGCCT CGCTCGCCGG GTCTAGGGCG
  TGCTAGACAA GGAACCACAC GGCCGAGCCT GTCTCGCGAG ATTTGGCTCA AGCTTCTTGC
  R
  CTTCTCTCGC GAGATCAGGT GGCTCTGGAC CGGGCGGCCA CTGCGCAGAG TGGAGGTCGT
  TGGAGTCACT CGTCTTCTTG TAGCTCCTGC CAGTAGCTCC GTGTCCCGCC CGCCCTAGCC
  ATGCTGTCCG CTCTCGCCCG TCCTGCCGGC GCCGCTCTCC GCCGCAGCTT CAGCACTTCG
  GCCCAGGTAC AAGGGGCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413846	PS02183093	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498340					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807469 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	34 bp upstream
Rr367967	regulatory region 367967	within coordinates
Rr622430	regulatory region 622430	388 bp distal
Rr622431	regulatory region 622431	125 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1789 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	230 bp upstream
Tssr49186	transcription start site region 49186	1979 bp downstream
Tssr49187	transcription start site region 49187	144 bp downstream
Tssr49188	transcription start site region 49188	13 bp upstream
Tssr49189	transcription start site region 49189	32 bp upstream
Tssr49190	transcription start site region 49190	59 bp upstream
Tssr49191	transcription start site region 49191	85 bp upstream
Tssr53761	transcription start site region 53761	287 bp upstream
Tssr53762	transcription start site region 53762	224 bp upstream