rs13498341 SNP Detail

Summary

• ID
  rs13498341
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCACACG GCCGAGCCTG
  TCTCGCGAGA TTTGGCTCAA GCTTCTTGCG CTTCTCTCGC GAGATCAGGT GGCTCTGGAC
  CGGGCGGCCA CTGCGCAGAG TGGAGGTCGT TGGAGTCACT CGTCTTCTTG TAGCTCCTGC
  CAGTAGCTCC GTGTCCCGCC CGCCCTAGCC ATGCTGTCCG CTCTCGCCCG TCCTGCCGGC
  K
  CCGCTCTCCG CCGCAGCTTC AGCACTTCGG CCCAGGTACA AGGGGCTGCC TGCCTAGGAA
  GGAACTCCGG GGGCGGCACA CGCGTCCCCG GAGCTCGGCG TTTCTTAACC ATCCAAGGCT
  CACTCTGGAC GTCTGGGCCG CCCGGCTCAC ATCCCGACCA ACATGGAAGG GGGACAGAGT
  CAGTCCAGGT TTCCTCCATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413847	PS02183096	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498341					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807620 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	Coding-NonSynonymous
Rr367967	regulatory region 367967	119 bp downstream
Rr622430	regulatory region 622430	539 bp distal
Rr622431	regulatory region 622431	276 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1638 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	381 bp upstream
Tssr49187	transcription start site region 49187	295 bp downstream
Tssr49188	transcription start site region 49188	121 bp downstream
Tssr49189	transcription start site region 49189	103 bp downstream
Tssr49190	transcription start site region 49190	77 bp downstream
Tssr49191	transcription start site region 49191	54 bp downstream
Tssr53761	transcription start site region 53761	438 bp upstream
Tssr53762	transcription start site region 53762	375 bp upstream