rs13498342 SNP Detail

Summary

• ID
  rs13498342
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135807935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGCTCACT CTGGACGTCT
  GGGCCGCCCG GCTCACATCC CGACCAACAT GGAAGGGGGA CAGAGTCAGT CCAGGTTTCC
  TCCATAGTCT GCGCTCCACG TAGGTGCAGA AGCCGAGGCT CGCGGTCCGG ATGCGAGTTG
  CATTATATGC AACTTTGCAT TGCTTCGACT TAACTGATTT TCTCCTTGAA GCCTCCATGG
  R
  TGTGAGGCAC CAGGAGAGAA ATAACGCGGA CGTTAACTTC GTAGTGCCGG GGGCTCCGAG
  GGTGGAGAAC GGATCAGGGT CACAGTAGTT TGGGAGATTC GATTGAAATT AGCACAGTCA
  GTGGCCTTCC CGCCCAGGGA TTGCTTGCTT TATGTCCGTT TATGTGGACC AGGCTGGCCT
  CGAACTCACG GAGTCCAGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413848	PS02183098	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498342					SNP	A	A	A	A	A	A	A	A	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135807935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	within coordinates
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	Intron
Rr367967	regulatory region 367967	434 bp downstream
Rr622430	regulatory region 622430	854 bp distal
Rr622431	regulatory region 622431	591 bp distal
Rr622432	regulatory region 622432	within coordinates
Rr622433	regulatory region 622433	1323 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	696 bp upstream
Tssr49187	transcription start site region 49187	610 bp downstream
Tssr49188	transcription start site region 49188	436 bp downstream
Tssr49189	transcription start site region 49189	418 bp downstream
Tssr49190	transcription start site region 49190	392 bp downstream
Tssr49191	transcription start site region 49191	369 bp downstream
Tssr53761	transcription start site region 53761	753 bp upstream
Tssr53762	transcription start site region 53762	690 bp upstream