rs13498343 SNP Detail

Summary

• ID
  rs13498343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135808817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATTCTTG GAGGATCATC
  CTTGCTTTGG GTAGACTTGG CCTAGGACAG TTACAGCTAA GCTATTTATA GTCAATCTTC
  TCCTGGGCCA GGGCCTCTTT AACTAGTGCA TGTCGGAATC AGTAAAGGAG ACCCAGGATC
  GTGTCAAGAG GGCAGGGTCA GTATTTTTTA CAAATCTCTA GCAAAATTGA TACAACCAAG
  R
  CTTGAGAAAC AATTACCATG CTCCGGAGGA GAACTGATCA TTCCAGGGAA GTCTACATTT
  CTTACCATCT AGGTCAGGTC TTCCTGTTTC CCATTCAGTC CATTCATTGA AAAATAAAGA
  TGCAAGGGGC TGGAGAGGTG CTCACAGTTA AAAGTGCTTG CTGATTTTGC AGAGACTAGA
  GTTTGGTTCC CAGGACCCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413849	PS02183101	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498343					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135808817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	616 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	within coordinates
Rr367967	regulatory region 367967	1316 bp downstream
Rr622430	regulatory region 622430	1736 bp distal
Rr622431	regulatory region 622431	1473 bp distal
Rr622432	regulatory region 622432	508 bp distal
Rr622433	regulatory region 622433	441 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	1578 bp upstream
Tssr49187	transcription start site region 49187	1492 bp downstream
Tssr49188	transcription start site region 49188	1318 bp downstream
Tssr49189	transcription start site region 49189	1300 bp downstream
Tssr49190	transcription start site region 49190	1274 bp downstream
Tssr49191	transcription start site region 49191	1251 bp downstream
Tssr53761	transcription start site region 53761	1635 bp upstream
Tssr53762	transcription start site region 53762	1572 bp upstream