rs13498344 SNP Detail

Summary

• ID
  rs13498344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135808919 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGTGCATG TCGGAATCAG
  TAAAGGAGAC CCAGGATCGT GTCAAGAGGG CAGGGTCAGT ATTTTTTACA AATCTCTAGC
  AAAATTGATA CAACCAAGGC TTGAGAAACA ATTACCATGC TCCGGAGGAG AACTGATCAT
  TCCAGGGAAG TCTACATTTC TTACCATCTA GGTCAGGTCT TCCTGTTTCC CATTCAGTCC
  R
  TTCATTGAAA AATAAAGATG CAAGGGGCTG GAGAGGTGCT CACAGTTAAA AGTGCTTGCT
  GATTTTGCAG AGACTAGAGT TTGGTTCCCA GGACCCAAGG CAGGTGACTC CAACCACCAG
  AGGGTCTGAA GCCTTCTTCT GCCCTCCGTG GGTACCTGCA CATAAACACA CACACCAAAA
  AATAATCCAG CTAACATATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20413850	PS02183103	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498344					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135808919 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	718 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	Intron
Rr367967	regulatory region 367967	1418 bp downstream
Rr622430	regulatory region 622430	1838 bp distal
Rr622431	regulatory region 622431	1575 bp distal
Rr622432	regulatory region 622432	610 bp distal
Rr622433	regulatory region 622433	339 bp proximal
Styxl1	serine/threonine/tyrosine interacting-like 1	1680 bp upstream
Tssr49187	transcription start site region 49187	1594 bp downstream
Tssr49188	transcription start site region 49188	1420 bp downstream
Tssr49189	transcription start site region 49189	1402 bp downstream
Tssr49190	transcription start site region 49190	1376 bp downstream
Tssr49191	transcription start site region 49191	1353 bp downstream
Tssr53761	transcription start site region 53761	1737 bp upstream
Tssr53762	transcription start site region 53762	1674 bp upstream