rs13498345 SNP Detail

Summary

• ID
  rs13498345
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:135809269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTACCTGC ACATAAACAC
  ACACACCAAA AAATAATCCA GCTAACATAT TACACCCTGG GTGTGGTGAT GCATGCTTGT
  AACCCCAGCC ACTCAGGAGT TCCAGACAGG AAGATTAAAA GTTTGAAACC CGCCCCGGTG
  ACTTAGGAGG ACTCTGAAAA GAAACTAGCA CTAGGGTATA CATAGTTCAG TGGTAAACAC
  W
  TGTGAGGCAT GCACAAAGCT CTGGGTGCTC AGATACAAAG ATGAATGGGA AGTCTGGGGT
  GGGTCACAGA CGAGTTAACC TGAACAGTAG AGTAGGGTTA GCTCAGCAGA GATGGTGAAT
  AATAGTGTGG TTAAGTGCCG TGTGGGGGTG GGGGGGGGTG TGTGTGGAGG ATGGAACTCG
  GGCCATACTC ATGCTAAGCG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20413851	PS02183106	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13498345					SNP	A	A	A	A	A	A	A	A	T	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135809269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16763	CpG island 16763	1068 bp distal
Mdh2	malate dehydrogenase 2, NAD (mitochondrial)	Intron
Rr367967	regulatory region 367967	1768 bp downstream
Rr622431	regulatory region 622431	1925 bp distal
Rr622432	regulatory region 622432	960 bp distal
Rr622433	regulatory region 622433	within coordinates
Tssr49187	transcription start site region 49187	1944 bp downstream
Tssr49188	transcription start site region 49188	1770 bp downstream
Tssr49189	transcription start site region 49189	1752 bp downstream
Tssr49190	transcription start site region 49190	1726 bp downstream
Tssr49191	transcription start site region 49191	1703 bp downstream