rs13498617 SNP Detail

Summary

• ID
  rs13498617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36925699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAATTATC TGTGAGTTAT
  GGGTTGGCCA TAGCTGCATA GTGAAACCCT GTATAAAAAT TTATTCAGCC TTGGATTCAC
  ATGAGATGCT CTCTCAATAA AACAAAACAA AACAAAACAA AAGACCCTTT GCCTGACGCT
  ACATACATTT AATCTCAGCA GTGAAGTGGT AGGGCAGAGG CAGGGGAATC TCTTGAGTGT
  R
  GGGTCACTTG AATAAGAGTA AAGATTAAAA CTAGCAGGAC ATAAGAGGGG TTTAATGTTT
  AGACAGCAGG TTGGATAGAT GAAGAGGGTA AGATGCAGGG GGAATTTGGG GAACGCAGCC
  TCAAAGAGGG AGGTCTTTAG GGGAACACAG AAGGGCAGAG GTCCTGTGAC TCTAGTAATA
  TACCAAGGAA TCTCTACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20414123	PS02183792	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498617					SNP	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36925699 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1088 bp proximal
Hars2	histidyl-tRNA synthetase 2	84 bp downstream
Rr405606	regulatory region 405606	1035 bp upstream
Rr536210	regulatory region 536210	740 bp proximal
Tssr150673	transcription start site region 150673	1186 bp upstream
Tssr150674	transcription start site region 150674	1272 bp upstream
Zmat2	zinc finger, matrin type 2	1277 bp upstream