rs13498618 SNP Detail

Summary

• ID
  rs13498618
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36926087 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTCTAC AAAGAGATTT
  TCAGGCCAGC CAGGGCCAAA TAGTGAGACC TTGTCTACAA ACATACCACA CCTATAATCC
  CTGTAATCCC TCTTAGAAAG TGGTGGCAAT AAGTTCAGGC CAAAACTGAA CTCTAATTTG
  CCTAGCAAAC CGTATTTTAA AGACTAAAAC ACTTGTGACT GTAGATGCCC CATTCACCAG
  S
  ATGTACTATG AATGTGGCTC TAAATTATGC ACAGAAGACA AGTAGTTTTA CATTGTCCCC
  TCCACCACTA CTACCCCTGA CCCCCACCAC CACCCCTGCG CCGCCAAAAA AATTAGTGCT
  ACTTTTTGGT TAAACTCATT TTGATGTCTG GAGAACATCT AAACTCATTT CATTTATACA
  GTACAATTTA ATCTTGAAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20414124	PS02183794	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498618					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36926087 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	700 bp proximal
Hars2	histidyl-tRNA synthetase 2	472 bp downstream
Rr405606	regulatory region 405606	647 bp upstream
Rr536210	regulatory region 536210	352 bp proximal
Tssr150673	transcription start site region 150673	798 bp upstream
Tssr150674	transcription start site region 150674	884 bp upstream
Zmat2	zinc finger, matrin type 2	889 bp upstream