rs13498619 SNP Detail

Summary

• ID
  rs13498619
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36926787 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCACTATT TTCAAAACTC TGATTCTTTG CATAATAGAA
  GAGATGAGCT ATTCTTCTGG GCTTGTTTTT AAAGCCAGAG AGAAAAACGT TGGCCCGTGC
  Y
  CTTACTTCCG TGTAGCTTCA CACTCCCTTT GCGCCTGCGC CATCTCCCTG GAGCAGAGGG
  CGGGGCCAAC AGGACTGCCT TAGAATCGCT CCAGTCCTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
ss20414125	PS02183797	PERLEGEN	MM_PANEL	f	SNP		T	T	T	C	C	T	T		C	C	C	T					C		C	C			C
ss39665036	mCV23084265	ABI	CRAMUS_MOUSE	f	SNP	C	T		T							C		T
ss49276062	NES12715244	PERLEGEN	MM_PANEL2	f	SNP	C			T	C		T		C			C	T	C	C		C		C		C	C			C
ss146951508	ENSMUSSNP3866946	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T									T
ss325584908	CHEV_18_36953388	CHEVERUD	SCREENING_POP	f	SNP																C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ	WSB/EiJ
rs13498619					SNP	C	T	T	T	C	C	T	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276062	NES12715244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36926787 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	within coordinates
Hars2	histidyl-tRNA synthetase 2	1172 bp downstream
Rr405606	regulatory region 405606	within coordinates
Rr536210	regulatory region 536210	within coordinates
Tssr150673	transcription start site region 150673	98 bp upstream
Tssr150674	transcription start site region 150674	184 bp upstream
Tssr150675	transcription start site region 150675	1368 bp upstream
Zmat2	zinc finger, matrin type 2	189 bp upstream