rs13498620 SNP Detail

Summary

• ID
  rs13498620
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36927317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCAGGGT TCAGGTTCGA
  GAGCTCCCCC GTAAGGCCTT GGCGCAGGGA CAGTGGAATC TCGGAAGTCT CTCGGGTTGG
  GGGTCCCGAG TCCACCAGAC CCCTGGGCGT TCCAGAGAGA CTTCTCTTCC GAAAGGTCCT
  GGGGCCGCCC CGGTGGCCGT TAGGCGGTTC CCTTAGTTTC TCCAGGGCAA CAGGCACAGC
  K
  ACGTATCTTG AGCACCTTTT CCCCCCCTAC AGACAAAAAA CTTGGACTTT CGCCGAAAGT
  GGGACAAAGA TGAATATGAG AAGCTCGCGG AGAAGAGACT CACAGAGGAG AGAGAGAAGA
  AGGATGGTGG GTGCTCGCTC CACGAAGGGA TAAGGGGACG GTAGAGATGA TGCTGTGGCT
  AGAGAAGGAA TGCCTCAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20414126	PS02183799	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T	T	T		T	T	G	T				T		T	T		G
ss49276059	NES12715248	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	T		G	T	T	T	G		T		T	G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13498620					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276059	NES12715248	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36927317 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	within coordinates
Hars2	histidyl-tRNA synthetase 2	1702 bp downstream
Rr405606	regulatory region 405606	282 bp downstream
Rr536210	regulatory region 536210	378 bp distal
Tssr150673	transcription start site region 150673	415 bp downstream
Tssr150674	transcription start site region 150674	327 bp downstream
Tssr150675	transcription start site region 150675	838 bp upstream
Tssr150676	transcription start site region 150676	1765 bp upstream
Tssr150677	transcription start site region 150677	1796 bp upstream
Zmat2	zinc finger, matrin type 2	Intron