rs13498621 SNP Detail

Summary

• ID
  rs13498621
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36927793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGCTTT TTCCTCTCCT
  TTTTACGTGA GCTTCCCCTA GGCGTAGCCC ATATTCCAAA TCAAATCAAA TCAAAACCTC
  CCAAACAAGC GTGTCCAGCT GCTTGGGTCT TAGTTGATTC CAGATGTAAC TGCATGAAAA
  CATTGAACAT ACGCTACTCG GTGTGAGTAC CCCTCTTTTG AAAGGGTCAC CTCCAGGAAA
  R
  ATTCAGAACT CCTCAGTTCA ACTAGACAAC ACATAGGAAA CACTGTTTAC ATTTGCTGGC
  TTTAAAGGGA GAAAAGCTCT TGAGAGTTGG CAGTACCATT GCAAGTCTGA GGCCAGCTTG
  GTCCACATAG TGACCAGGCC TATGTCTATA TAAGTCCAGG CCAATTAGAG TCTTTCCTAG
  CCTCTTTGAA TTGCTACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20414127	PS02183802	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498621					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36927793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	421 bp distal
Rr405606	regulatory region 405606	758 bp downstream
Rr536210	regulatory region 536210	854 bp distal
Tssr150673	transcription start site region 150673	891 bp downstream
Tssr150674	transcription start site region 150674	803 bp downstream
Tssr150675	transcription start site region 150675	362 bp upstream
Tssr150676	transcription start site region 150676	1289 bp upstream
Tssr150677	transcription start site region 150677	1320 bp upstream
Tssr150678	transcription start site region 150678	1780 bp upstream
Zmat2	zinc finger, matrin type 2	Intron