rs13498623 SNP Detail

Summary

• ID
  rs13498623
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGTGCAGC CTGTCAAGCG
  GGAGCTTCTG CGGCACAGGG ATTACAAGGT GGACCTGGAG TCCAAGCTGG GGAAGACGAT
  TGTTATCACC AAGACGACCC CACAGTCTGA AATGGGAGGG TGAGTTGCTT CCTGTCCGAC
  TCTTAATACC ACAGCTGGCC TAATAAACTG TATTGGTTTT TAGGAAGTGT TGAGGAGAAT
  Y
  CTGGGCCCAG GGATGGCCAC CGTTCTGACC ATAACCTGAT TCTTTGTCTT TCTTTGTCCC
  CTGAAGTTTG TAGCCCACTC GGTCCTATTT CTAGGAGGGG TGGTTCTCTG GGCTTCTTCC
  TATTGGTACT GTAATACTTC CCTGATATCT TCAGGGGGGC TATATAGTCT GTTAGAAGAC
  CTGAAGGCTC GGGGTGGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20414129	PS02183806	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13498623					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	927 bp distal
Rr405606	regulatory region 405606	1264 bp downstream
Rr536210	regulatory region 536210	1360 bp distal
Tssr150673	transcription start site region 150673	1397 bp downstream
Tssr150674	transcription start site region 150674	1309 bp downstream
Tssr150675	transcription start site region 150675	118 bp downstream
Tssr150676	transcription start site region 150676	783 bp upstream
Tssr150677	transcription start site region 150677	814 bp upstream
Tssr150678	transcription start site region 150678	1274 bp upstream
Zmat2	zinc finger, matrin type 2	Intron