rs13498624 SNP Detail

Summary

• ID
  rs13498624
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36929057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGGTTCG GAGGCTCAAG
  TTTATTCTCT GGGCCTGCTT GTAAGGTCAT TCACAATGAA GTGTAAAGAG GGACTTTCCC
  TAAAGCAAGT CATGTGAAGT TTGTCTGTTT TGTTAATTGA GACATTAATT AGACATCATC
  TAATTTTACC TAGAGATTTG AGTTTCTTTC CTGAAAACAG TAAGATCCTT AGAAACCAGA
  Y
  TGACCCATGT GCTGTTTCTT CCCATTTGTC AGCTACTACT GCAATGTCTG TGACTGTGTG
  GTGAAAGACT CCATTAACTT CCTGGACCAC ATTAATGGAA AGAAACGTAA GGCATGGAGG
  TAGTTGGTGG CTGGAGCTGG GTTGGGTTTT AAAGGTGTGC TGGAGGGCAG GTGTGGTAGA
  GTGGTTTTCT GGGGCCTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20414130	PS02183809	PERLEGEN	MM_PANEL	f	SNP		T	T	T	T	T	T	T		T	T	T	T				T		T	T		C
ss49276051	NES12715264	PERLEGEN	MM_PANEL2	f	SNP	T			T	T		T		T	T		T	T	T	T	C		T		T	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13498624					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49276051	NES12715264	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36929057 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1685 bp distal
Tssr150675	transcription start site region 150675	876 bp downstream
Tssr150676	transcription start site region 150676	25 bp upstream
Tssr150677	transcription start site region 150677	56 bp upstream
Tssr150678	transcription start site region 150678	516 bp upstream
Zmat2	zinc finger, matrin type 2	Intron