rs13499563 SNP Detail

Summary

• ID
  rs13499563
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609244 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATCAGGGA TAACCAGTGA
  ATTTAAGTTT CTAAGTCCAA TTGCCTCTAA CTTCCTAACC GAAAGCACAG GGAGAGAAAT
  AGAATAAAAG CTAAACCCTT CTGCCCATGG ATGAAGCTCT AATGTAAACT ATACCCTTGT
  TGTGTAATGA AGAATGATTT CATGTTAACA TCTAGAAGTT AACTAATTTA GGACAGAAAA
  S
  AATACCTGTA TTTATTCCCA AAAACCTTTT CTTTAATTTA TGAAATGCAT GTGTTGTGTG
  CTATCTCAAA TCTAATTTGA TTTCTCTTTG TTTTTTAAGA TTTGTTGAAC TGCAATCTAT
  TAAACAACAA ATCTTGGTAG AGATTGTTTA AGCTGTTTTT CCATATCTAC ATTTTTCATT
  TATAATTATG TTCTGAGTCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
ss20415087	PS02186248	PERLEGEN	MM_PANEL	f	SNP		G	G		G	G			G	C	G				G		G	G	G
ss49274185	NES12728539	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G		G	G		C	G	G	C	C		G		G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ	WSB/EiJ
rs13499563					SNP	G	G	G	G	G	G	G	G	G	C	G	G	C	C	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274185	NES12728539	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609244 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	573 bp distal
Gm37388	predicted gene, 37388	Intron
Gm38666	predicted gene, 38666	Intron
Gm38667	predicted gene, 38667	Intron
Pcdha4b	protocadherin alpha 4B	Intron
Pcdhb15	protocadherin beta 15	mRNA-UTR
Pcdhb16	protocadherin beta 16	1623 bp upstream
Rr536278	regulatory region 536278	1480 bp proximal
Rr536279	regulatory region 536279	1532 bp proximal
Rr536280	regulatory region 536280	1634 bp proximal
Tssr5286	transcription start site region 5286	1655 bp upstream
Tssr150708	transcription start site region 150708	1614 bp upstream