rs13499566 SNP Detail

Summary

• ID
  rs13499566
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37609729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCATCAT ACATGATTTC
  ATCACCTTGG GGACATGGTC TCTCTGTGTC CATGTCCAGG ATAGCTTTGA ACTTTTGATT
  TTCCTGCCCC AGACTTTCAA GTTGCAGCTA CCACAGGCCT CAGCCTATCG CCTTCTTTAT
  TTCAGAAGAA GCCAATAAGT GGCGGTATCT CAATGATGAG CAAGTAGAAG TTGGTAGAGA
  Y
  TTGGTAAGAT CCATAATTAT TAACTGGCAG AGCAGAGCCA AACAATCTCC TGATTGTTTC
  CATTTTGTTT TTCTTGTTTG AAGTGTGGAA GGTTCCTTGT TCTGTCCATC TCCAGGCAGG
  TGACTTGGCA ACATTATGCT GTTTTCTATT ACTAGATATC ATGTGTCCTA CTCACATTGC
  TCATCAGCCT CTTCTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss20415090	PS02186255	PERLEGEN	MM_PANEL	f	SNP		C	C	C	C	C	C	C		C	C	T	C			C		C	C		C
ss49274181	NES12728443	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		C		C	C		T	C	C	T		C		C	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs13499566					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274181	NES12728443	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37609729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	1058 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	336 bp downstream
Pcdhb16	protocadherin beta 16	1138 bp upstream
Rr536278	regulatory region 536278	995 bp proximal
Rr536279	regulatory region 536279	1047 bp proximal
Rr536280	regulatory region 536280	1149 bp proximal
Tssr5286	transcription start site region 5286	1170 bp upstream
Tssr150708	transcription start site region 150708	1129 bp upstream