rs13499567 SNP Detail

Summary

• ID
  rs13499567
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37610488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATAGTGTT GGGTTACTCT
  CCCTCCAGAA ACTCCTGTTT CTTGTTTGTG AAAATGGAGA ATTCACAACA CTCCTTGGAC
  CTAGGCACTA TTATCTCATC TGTAGATAAG GAATCTAGAG CAAAGAGGAT AAATAACTTG
  CACAAGATTC ACAGCTACTC TTTCTGTGGT TCATCACACT AAAAGTAGAT AAATCCCCAA
  R
  TCTTCAGTTA CTAGAAACAT ACATGCAAAC ACATGTATAT ATTTCTTGCA AATATTTTTC
  CTTACAGGTT GTGATTTAAA AGCGTATCTT TTGCCCCAAA CGCAATAAGA ATTATTGAAT
  CATTACTCTC CAGCAATGAC ATTTCTCTTG TGTGACCTTC AGGAAGTTGT CTGCCCAAGA
  AGGCACAGCA ATAAGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss20415091	PS02186257	PERLEGEN	MM_PANEL	f	SNP		A	A	A	A	A	A	A		A	A	G	A				A		A	A
ss49274179	NES12728344	PERLEGEN	MM_PANEL2	f	SNP	A			A	A		A		A	A		G	A	A	G	G		A		A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MRL/MpJ	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs13499567					SNP	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49274179	NES12728344	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37610488 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9914	CpG island 9914	1817 bp distal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb15	protocadherin beta 15	1095 bp downstream
Pcdhb16	protocadherin beta 16	379 bp upstream
Rr536278	regulatory region 536278	236 bp proximal
Rr536279	regulatory region 536279	288 bp proximal
Rr536280	regulatory region 536280	390 bp proximal
Tssr5286	transcription start site region 5286	411 bp upstream
Tssr150708	transcription start site region 150708	370 bp upstream