rs13499570 SNP Detail

Summary

• ID
  rs13499570
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:37611599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAGCTAG AAGTCACAGA
  CATAAATGAC CACTCACCAG AATTCCTGGA CAAAGAGATC ATGCTAAAGA TATCAGAAAG
  CAGTCTTCCT GGAGCTACAT TTCCTCTGAA GAATGCTCAG GACATGGATG TAGGCCAAAA
  CGGTATTGAC AAGTATCTGA TCAGTTCCAA TTCCTATTTT CGAGTGCTCA CTCGGAAACG
  M
  AGCGATGGCA AGAAATACCC TGAACTGGTA CTAGACAGAG CACTGGATAG AGAGGAGGAA
  GCTGAGCTCA GGCTAACCCT CACAGCACAG GATGGTGGCT CTCTGCCTAG GTCTGGAACC
  ACTGAAGTCC ACATTGAAGT CCTGGACATC AATGATAACG CTCCTCAATT TGAGCAGCTT
  TTTTACAAAG CACAGATCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20415094	PS02186265	PERLEGEN	MM_PANEL	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13499570					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:37611599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9915	CpG island 9915	903 bp proximal
Gm37388	predicted gene, 37388	within coordinates
Gm38666	predicted gene, 38666	within coordinates
Gm38667	predicted gene, 38667	within coordinates
Pcdha4b	protocadherin alpha 4B	within coordinates
Pcdhb16	protocadherin beta 16	within coordinates
Rr536278	regulatory region 536278	722 bp distal
Rr536279	regulatory region 536279	802 bp distal
Rr536280	regulatory region 536280	523 bp distal
Tssr5286	transcription start site region 5286	690 bp downstream
Tssr150708	transcription start site region 150708	711 bp downstream