rs13500807 SNP Detail

Summary

• ID
  rs13500807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192452447 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCT GGCTTCTATT CTTCATGTTC
  Y
  GACTTCCCTG TGATTTCTCT CCCCG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20416342	PS02189436	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13500807					SNP	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192452447 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1234	CpG island 1234			339 bp proximal
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426393	regulatory region 426393			within coordinates
Rr426394	regulatory region 426394			438 bp proximal
Rr426395	regulatory region 426395			1064 bp proximal
Tssr15828	transcription start site region 15828			1060 bp downstream