rs13500810 SNP Detail

Summary

• ID
  rs13500810
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192451670 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTCA GGGAGAAGGG TTTATTCCTT
  R
  TGCAGGTTAG GGGTTTATTC TCTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20416345	PS02189444	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	CAST/EiJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13500810					SNP	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192451670 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi1234	CpG island 1234			1116 bp proximal
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426393	regulatory region 426393			459 bp proximal
Rr426394	regulatory region 426394			1215 bp proximal
Rr426395	regulatory region 426395			1841 bp proximal
Tssr15828	transcription start site region 15828			1837 bp downstream