rs13501115 SNP Detail

Summary

• ID
  rs13501115
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192376694 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              TGCCACCTCA GCGGGGTATG
  TGGTCTAACG GCAGTCTTGC ACCTCATGGA AAGCAAGCCA CTCTTAAAGT CACAGAACAC
  ACAAAAGCCA CAGATCAAGA GGTTTCCTGT AAATGTTTCT GGGGACATCA GGAAGTCAGG
  TTATATCAAA CCAGAAAAAT CTCTGCTGTG GTCTCAGACG CCATCTGATG GCAGTGTGAG
  S
  TTTTTAGGTT GTGGAAGCTA GTGGTCTGAT TAGTTATATC CCCCACATTT TATGGCGGTG
  GACAATGAAT GGATACTTCT GGGACTATGG TATAGTAAAG CAGTCTGGCT CTGGATCAGC
  AGGGTTCTAA GTCTCCAATG GCTCTGCCAC AGCTGATCCG TGGGTCTTGT AGAGTCTTTA
  GTGTAGATAT AGCTTGTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ
ss20416651	PS02189888	PERLEGEN	MM_PANEL	f	SNP	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ
rs13501115					SNP	C	C	C	C	C	C	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192376694 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426377	regulatory region 426377			1935 bp proximal