rs13502475 SNP Detail

Summary

• ID
  rs13502475
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:149723751 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCATACTTAA ATGGTGTCCA
  GTCATTAGGA CTTTGGAGTC ATAAGCCAAT GTAGTGCTTC AGGGAAAGTG ATCAATAAGC
  AGTCAAGAGG CTAAAAAGGC AAAGCTACAA TGATCATTTC CTTCAGGAAA AAAAAATACA
  TATCCACTGC CCAGAAATTG GGTAGTCCCT TGAGTGGTTA TTGTTTTTTG TGAGCCTTTC
  S
  ATAGCTGCCT TGGAAGGGGT CACTGCCCCT CCTCTGGACT TTGTATAGTT GGTCCATGGA
  ATGACTGAGG CACAGAAGAA GTCACTGGAG GAGGGACTCC GGGTGGAGAA GGAGCCAAGA
  GAGCTTAGGC TGAGAGCTAT CCTGAGACTC CAGCTCTGTT CCCATTGGAT CCCGAGGATC
  TGGGCTTCCT AAAGTGGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20418036	PS02193779	PERLEGEN	MM_PANEL	f	SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13502475					SNP	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:149723751 () rs orientation: reverse

Symbol	Name	Function Class
Gm21221	predicted gene, 21221	1704 bp downstream
Gm71685	predicted gene, 71685	1227 bp upstream