rs13502534 SNP Detail

Summary

• ID
  rs13502534
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  121
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:135659012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGAGACC AGCCTAGTCT
  AGATAATTCC AGGACGGCAA AGTCTGTAAA GAGAAACCCT GTTTGGAAGA ACCAAACAAA
  TAGACGGAAT AAAATGAAAG TAAGGAATAT AGCTCCCACA AGCTTTGCAG TAGGTGACAC
  CTGCCTTGTG GGGGTCCTTA GATTAGGGAC CAGAAGGCCT GGGGTCAGCA GATGTCTCAT
  Y
  GAAGCCAAAT AGAGTGAGAT AGCTGGCCTA TCTCTCTTCA CACTGCCTCT GCCTCTTTTA
  CTGTCTCAAC CTTAGCATGG GGTTCTACTG GCCTCTGTGT GGAAGCAAGC TGTTTTGTTG
  AATAATGCAA GGATAACATG AATAGACTTC CCTTCAAGGC TTTCTTCCTG GCACCGTGAC
  TGTAAATAGC AGACCGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
ss20418097	PS02182548	PERLEGEN	MM_PANEL	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C57BL/6J	CAST/EiJ	MRL/MpJ	NZB/BlNJ	NZW/LacJ	SPRET/EiJ
rs13502534					SNP	T	T	T	T	T	T	T	T	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:135659012 () rs orientation: forward

Symbol	Name	Function Class
Rr399417	regulatory region 399417	1210 bp downstream
Rr622386	regulatory region 622386	1378 bp distal
Rr622387	regulatory region 622387	772 bp distal
Rr622388	regulatory region 622388	404 bp proximal
Rr622389	regulatory region 622389	640 bp proximal